headshot of Allon Wagner

Research Bio

Allon Wagner is an Assistant Professor of Computer Science at the Department of Electrical Engineering and Computer Sciences (EECS), Assistant Professor of Immunology and Molecular Medicine at the Department of Molecular and Cell Biology (MCB), and a member of the Center for Computational Biology (CCB). His group develops data-driven algorithms to analyze molecular atlases (e.g., single-cell or spatial transcriptomics) and applies them to study the immune system, focusing on immune-metabolic dysregulation in cancer and autoimmunity.

Research Expertise and Interest

computational biology, single-cell genomics, immunology, systems biology, cell metabolism

Teaching

Courses taught during the three most recent terms
2026 Spring
  • Algorithms for Computational Biology  [CMPBIO 276]  

  • Algorithms for Computational Biology  [CMPBIO C176]  

  • Supervised Independent Study  [COMPSCI 199]  

  • Individual Research  [COMPSCI 299]  

  • Professional Preparation: Supervised Teaching of Computer Science  [COMPSCI 399]  

  • Algorithms for Computational Biology  [COMPSCI C176]  

  • Senior Honors Thesis Research  [COMPSCI H196A]  

  • Research Review in Immunology and Pathogenesis: B Cell Differentiation  [MCELLBI 259H]  

  • Research  [MCELLBI 292]  

2025 Fall
  • Special Topics  [COMPSCI 194]  

  • Special Topics  [COMPSCI 294]  

  • Individual Research  [COMPSCI 299]  

  • Supervised Independent Study and Research  [MCELLBI 199]  

  • Research Review in Immunology and Pathogenesis: B Cell Differentiation  [MCELLBI 259H]  

  • Research  [MCELLBI 292]  

2025 Spring
  • Algorithms for Computational Biology  [CMPBIO 276]  

  • Algorithms for Computational Biology  [CMPBIO C176]  

  • Individual Research  [COMPSCI 299]  

  • Professional Preparation: Supervised Teaching of Computer Science  [COMPSCI 399]  

  • Algorithms for Computational Biology  [COMPSCI C176]  

  • Research  [MCELLBI 292]